PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 473aa    MW: 53765.7 Da    PI: 8.4742
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2228.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.72.9e-1687168290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                fY++YA+ +GF  r ++sk +    ++ +++ vC+k+g++  + +k     ++r+ tr++Ckak+++k   +g++++ k+++ H H la
  Dca2228.1  87 FYRKYATACGFVSRLASSKLK--GPNVSHKHVVCNKQGNTVAKGTK-----QKRQMTRVNCKAKIVLKHIGQGHYQILKFVEGHGHLLA 168
                ***************998887..7779************9998877.....9999*******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-1387168IPR004330FAR1 DNA binding domain
PfamPF105515.7E-29290384IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
NEKSNVLPAA SNQELNIPDC PPELNEGTIG LDSSMSATIS TSITIGNEDS NVIPAASDQN  60
LRIPDCPPEL KPVVGMRFVT LQHVIHFYRK YATACGFVSR LASSKLKGPN VSHKHVVCNK  120
QGNTVAKGTK QKRQMTRVNC KAKIVLKHIG QGHYQILKFV EGHGHLLATP NTMAHLKQTR  180
ELNLVHKKII LDNSKTNHGP VKSFRMFKEY VRGYNNIGAS LEDFKNFSRD VKKFIKASDA  240
QMLIEMFMHK RGMCKSFYFD FDVDDEGRLS RIFWADPIGI KNYILFGDMV SFDTTFDMNT  300
YKMVFAPFTG VDHHKRCVTF AAGLLSDESA DSFSWLFDCF VKAMGGRFPV CIITDQDLGI  360
KAGVERVFGE KTQHRYCMWH ILKKLPEKVG STICRDTNFL SEISSCVWAE DMEPNEFEDK  420
WCSVVTSNGL TDNEWLKQMY EIRKTWVPAY FRDLFLGGIM RTTSRSESEN NFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668319.11e-152PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-69FAR1-related sequence 5